GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces
نویسندگان
چکیده
منابع مشابه
GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces
The Gene Ontology (GO) provides a resource for consistent annotation of genes and gene products that is extensively used by numerous large public repositories. The GO is constructed of three subontologies describing the cellular component of action, molecular function, and overall biological process of a gene or gene product. Querying across the subontologies is problematic and no standard meth...
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The Semantic Web was designed to unambiguously define and use ontologies to encode data and knowledge on the Web. Many people find it difficult, however, to write complex RDF statements and queries because doing so requires familiarity with the appropriate ontologies and the terms they define. We describe a system that automatically maps a set of ordinary English words to a set of appropriate o...
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Many bioinformatics applications would benefit from comparing proteins based on their biological role rather than their sequence. This manuscript adds two new contributions. First, a study of the correlation between Gene Ontology (GO) terms and family similarity demonstrates that protein families constitute an appropriate baseline for validating GO similarity. Secondly, we introduce GraSM, a no...
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ژورنال
عنوان ژورنال: International Journal of Genomics
سال: 2013
ISSN: 2314-436X,2314-4378
DOI: 10.1155/2013/594528